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Project
Download File
Open Modeling and Exchange (OMEX)
Outputs
JavaScript Object Notation (JSON) in BioSimulators simulator schema
Zip of HDF5 and PDF files
Log
JavaScript Object Notation (JSON) in BioSimulators log schema
biomodels.db:BIOMD0000000562
Claudine Chaouiya, Duncan Bérenguier, Sarah M Keating, Aurélien Naldi, Martijn P van Iersel, Nicolas Rodriguez, Andreas Dräger, Finja Büchel, Thomas Cokelaer, Bryan Kowal, Benjamin Wicks, Emanuel Gonçalves, Julien Dorier, Michel Page, Pedro T Monteiro, Axel von Kamp, Ioannis Xenarios, Hidde de Jong, Michael Hucka, Steffen Klamt, Denis Thieffry, Nicolas Le Novère, Julio Saez-Rodriguez & Tomáš Helikar. SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools. BMC Syst Biol 7 (2013): 135.
CC0-1.0
Uniform time course
synchronous logical model simulation method
SBML
SED-ML
COMBINE/OMEX
GINsim 3.0.0b
61fea485f499ccf25faafc50
tumor necrosis factor-mediated signaling pathway
epidermal growth factor receptor signaling pathway
Homo sapiens
Aidan MacNamara, Camille Terfve, David Henriques, Beatriz Peñalver Bernabé & Julio Saez-Rodriguez. State-time spectrum of signal transduction logic models. Phys Biol 7 (2012): 045003.
BioSimulations
Jonathan Karr
View project essentials in the liteweight Reproducibility Portal.
BIOMD0000000562_url.xml
Systems Biology Markup Language (SBML)
expected-results.json
JavaScript Object Notation (JSON)
Figure3.jpg
Joint Photographic Experts Group (JPEG)
metadata.rdf
OMEX Metadata
reports.h5
Hierarchical Data Format 5 (HDF5)
simulation.sedml
Simulation Experiment Description Markup Language (SED-ML)