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Project
Download File
Open Modeling and Exchange (OMEX)
BIOMD0000000562_url.xml
Systems Biology Markup Language (SBML)
expected-results.json
JavaScript Object Notation (JSON)
Figure3.jpg
Joint Photographic Experts Group (JPEG)
metadata.rdf
OMEX Metadata
reports.h5
Hierarchical Data Format 5 (HDF5)
simulation.sedml
Simulation Experiment Description Markup Language (SED-ML)
Outputs
JavaScript Object Notation (JSON) in BioSimulators simulator schema
Zip of HDF5 and PDF files
Log
JavaScript Object Notation (JSON) in BioSimulators log schema
biomodels.db:BIOMD0000000562
Claudine Chaouiya, Duncan Bérenguier, Sarah M Keating, Aurélien Naldi, Martijn P van Iersel, Nicolas Rodriguez, Andreas Dräger, Finja Büchel, Thomas Cokelaer, Bryan Kowal, Benjamin Wicks, Emanuel Gonçalves, Julien Dorier, Michel Page, Pedro T Monteiro, Axel von Kamp, Ioannis Xenarios, Hidde de Jong, Michael Hucka, Steffen Klamt, Denis Thieffry, Nicolas Le Novère, Julio Saez-Rodriguez & Tomáš Helikar. SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools. BMC Syst Biol 7 (2013): 135.
CC0-1.0
Uniform time course
synchronous logical model simulation method
SBML
SED-ML
COMBINE/OMEX
GINsim 3.0.0b
61fea485f499ccf25faafc50
tumor necrosis factor-mediated signaling pathway
epidermal growth factor receptor signaling pathway
Homo sapiens
Aidan MacNamara, Camille Terfve, David Henriques, Beatriz Peñalver Bernabé & Julio Saez-Rodriguez. State-time spectrum of signal transduction logic models. Phys Biol 7 (2012): 045003.
BioSimulations
Jonathan Karr
View project essentials in the liteweight Reproducibility Portal.