| Simulator: xpp 8.0 | |
| CPU cores: 1 | |
| RAM: 8 GB | |
| Max time: 20 m |
| Submitted: 2022-02-28 09:46:49 PM | |
| Updated: 2022-02-28 09:47:31 PM | |
Status: Succeeded |
Verma P, Kienle A, Flockerzi D, Ramkrishna D. Using Bifurcation Theory for Exploring Pain. Industrial & Engineering Chemistry Research. 2019.
Verma P, Kienle A, Flockerzi D, Ramkrishna D. Computational analysis of a 9D model for a small DRG neuron. arXiv preprint arXiv:2001.04915. 2020 Jan 14.
Verma P, Eaton M, Kienle A, Flockerzi D, Yang Y, Ramkrishna D. A mathematical investigation of chemotherapy-induced peripheral neuropathy. bioRxiv. 2020 Jan 1.
Both XPP (DRG.ode) and MATCONT (*.m) files are provided in the respective folders.
In MATCONT, analytical Jacobian was used. You can run DRG_Jacobian.m to generate the Jacobian matrix functions (J_D.m, JhKA_D.m, JN_D.m, JP_D.m). DRG.m contains the equations. DRG_Steady_Periodic_I.m can be used to perform continuation of equilibrium and periodic solutions for the set of equations. Note that an extra parameter V12 is introduced in the MATCONT equations. This is kept as zero, but can be varied as was done for the first aforementioned paper.
The MATCONT equations are scaled, while XPP equations are not.
20200521 An update from Parul Verma supplied another XPP file and the bioRxiv citation was added to this Readme
To improve your experience with BioSimulations, we use cookies to store information about your preferences and to track your use of the site. This information does not identify you personally or preserve personal information about you. This allows us to improve the site and gather usage information for funding and development. Because we respect your right to privacy, you can opt-out of this data.
BioSimulations collects limited personal data to credit authors and improve the platform. By using this site, you agree to our terms of service, privacy policy, and use of cookies.
