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Project
Download File
Open Modeling and Exchange (OMEX)
Outputs
JavaScript Object Notation (JSON) in BioSimulators simulator schema
Zip of HDF5 and PDF files
Log
JavaScript Object Notation (JSON) in BioSimulators log schema
modeldb:259786
Samuel Wittman, Ana Paula Abdala & Jonathan E. Rubin. Reduced computational modelling of Kölliker-Fuse contributions to breathing patterns in Rett syndrome. The Journal of Physiology 597, 10: 2651-2672 (2019).
Uniform time course
Numerical Recipes in C "quality-controlled Runge-Kutta" method
XPP
SED-ML
COMBINE/OMEX
XPP 8.0
621d42c5d8a14a834cbf3fbe
Realistic Network
Brainstem
I Na,p
Glutamate
Gaba
Glycine
AMPA
GabaA
Respiratory control
ModelDB
Jonathan Rubin
Sense Lab at Yale University
Jonathan R. Karr
View project essentials in the liteweight Reproducibility Portal.
3p_intact_DRUG.set
XPP_SET
3p_intact.set
3p_mod_rett_intact_DRUG.set
3p_mod_rett_intact.set
3p_mod_rett_vagotomized_DRUG.set
3p_mod_rett_vagotomized.set
3p_severe_rett_intact_DRUG.set
3p_severe_rett_intact.set
3p_severe_rett_vagotomized_DRUG.set
3p_severe_rett_vagotomized.set
3p_vagotomized_DRUG.set
3p_vagotomized.set
3p.ode
3p.sedml
Simulation Experiment Description Markup Language (SED-ML)
4p-e_intact_DRUG.set
4p-e_intact.set
4p-e_mod_rett_intact_DRUG.set
4p-e_mod_rett_intact.set
4p-e_mod_rett_vagotomized_DRUG.set
4p-e_mod_rett_vagotomized.set
4p-e_severe_rett_intact_DRUG.set
4p-e_severe_rett_intact.set
4p-e_severe_rett_vagotomized_DRUG.set
4p-e_severe_rett_vagotomized.set
4p-e_vagotomized_DRUG.set
4p-e_vagotomized.set
4p-e.ode
4p-e.sedml
4p-r_intact_DRUG.set
4p-r_intact.set
4p-r_mod_rett_intact_DRUG.set
4p-r_mod_rett_intact.set
4p-r_mod_rett_vagotomized_DRUG.set
4p-r_mod_rett_vagotomized.set
4p-r_severe_rett_intact_DRUG.set
4p-r_severe_rett_intact.set
4p-r_severe_rett_vagotomized_DRUG.set
4p-r_severe_rett_vagotomized.set
4p-r_vagotomized_DRUG.set
4p-r_vagotomized.set
4p-r.ode
4p-r.sedml
ChangeXPPodeFile.m
MATLAB
ChangeXPPsetFile.m
RunXPP.m
orbit_tracker.m
rett_figure_script.m
set_bar_graphs.m
traj_plotter_many.m
traj_plotter.m
metadata.rdf
OMEX Metadata
README.html
Hypertext Markup Language (HTML)
screenshot1.png
Portable Network Graphics (PNG)
screenshot2.png
screenshot3.png