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Project
Download File
Open Modeling and Exchange (OMEX)
Outputs
JavaScript Object Notation (JSON) in BioSimulators simulator schema
Zip of HDF5 and PDF files
Log
JavaScript Object Notation (JSON) in BioSimulators log schema
modeldb:247694
Audrey Denizot, Misa Arizono, U. Valentin Nägerl, Hédi Soula & Hugues Berry. Simulation of calcium signaling in fine astrocytic processes: Effect of spatial properties on spontaneous activity. PLOS Computational Biology 15, 8: e1006795 (2019).
Uniform time course
explicit fourth-order Runge-Kutta method
XPP
SED-ML
COMBINE/OMEX
XPP 8.0
621d42c087550e369891bbcd
Glia
Astrocyte
IP3
Signaling pathways
Calcium dynamics
ModelDB
Audrey Denizot
Sense Lab at Yale University
Jonathan R. Karr
View project essentials in the liteweight Reproducibility Portal.
pcbi.1006795.g001.jpg
Joint Photographic Experts Group (JPEG)
pcbi.1006795.g002.jpg
pcbi.1006795.g003.jpg
pcbi.1006795.g004.jpg
pcbi.1006795.g005.jpg
pcbi.1006795.g006.jpg
pcbi.1006795.g007.jpg
calcium_gillespie.py
Python
gillespie_functions.py
README
Other format
metadata.rdf
OMEX Metadata
IP3R_model.ode
IP3R_model.sedml
Simulation Experiment Description Markup Language (SED-ML)
cell.c
C source
cell.h
cl1000.map
Tab-separated values (TSV)
clist.c
clist.h
d4s_spont.c
makefile
params.h
part.c
part.h
receptor.c
receptor.h
utils.c
utils.h
3d_gcamp_visual.py
3d_gcamp.py
astrocyte.inp
TEXT
cylinder_mesh.txt
ip3r_model_mesh_gcamp.py
ip3r_model_mesh_gcamp.pyc