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Project
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Open Modeling and Exchange (OMEX)
Outputs
JavaScript Object Notation (JSON) in BioSimulators simulator schema
Zip of HDF5 and PDF files
Log
JavaScript Object Notation (JSON) in BioSimulators log schema
modeldb:206365
Anatoly Buchin, Anton Chizhov, Gilles Huberfeld, Richard Miles & Boris S. Gutkin. Reduced Efficacy of the KCC2 Cotransporter Promotes Epileptic Oscillations in a Subiculum Network Model. The Journal of Neuroscience 36, 46: 11619-11633 (2016).
Uniform time course
Euler forward method
XPP
SED-ML
COMBINE/OMEX
XPP 8.0
621d42b9b50991044c79ae18
Synapse
Extracellular
Dendrite
Realistic Network
Glia
Hippocampus
Hippocampus CA1 pyramidal GLU cell
Hodgkin-Huxley neuron
Hippocampus CA1 PV+ fast-firing interneuron
KCC2
I Sodium
I Potassium
Na/K pump
I Calcium
I Chloride
I Cl, leak
I M
I Na, leak
I K,leak
I_HCO3
I Na,p
Ions
Gaba
Glutamate
NMDA
AMPA
GabaA
Bursting
Epilepsy
Chloride regulation
Activity Patterns
Oscillations
Homeostasis
Potassium buffering
Brain Rhythms
Extracellular Fields
ModelDB
Anatoly Buchin
Sense Lab at Yale University
Jonathan R. Karr
View project essentials in the liteweight Reproducibility Portal.
Bazh_Ko_Cli_altKCC2_full_64.m
MATLAB
Bazh_Ko_Cli_altKCC2_full_90.m
IC_end.m
K.m
psp_norm.sfit
MATLAB data
PSP.jpg
Joint Photographic Experts Group (JPEG)
PSP.mat
VS_norm_-64.eps
PostScript
VS_norm_-64.fig
MATLAB figure
VS_norm_-64.jpg
VS_norm_-90.eps
VS_norm_-90.fig
VS_norm_-90.jpg
Bazh_Ko_Cli_altKCC2_full_68.m
psp_path.jpg
psp_path.mat
psp_path.sfit
-68.fig
-68.jpg
VS_path_-68.eps
VS_path_-68.fig
VS_path_-68.jpg
-90.fig
-90.jpg
VS_path_-90.eps
VS_path_-90.fig
VS_path_-90.jpg
Data_fit.fig
Data_fit.jpg
Data_fit.mat
KCC2_fit.m
KCC2_fit.mat
NKCC1_effect.fig
NKCC1_effect.jpg
NKCC1_effect.png
Portable Network Graphics (PNG)
NKCC1(-).sfit
NKCC1(+).sfit
NORM_lin_fit.sfit
NORM_lin.jpg
PATH_lin.jpg
PATH_lin.sfit
Fig.1.jpg
Bazh_Ko_Cli_altKCC2_norm.m
Bazh_Ko_Cli_altKCC2_path.m
Bazh_PY_altKCC2_Ko_Cli_min_burst_Ko_Cli_fix_NEW.ode
Bazh_PY_altKCC2_Ko_Cli_min_burst_Ko_Cli_fix_NEW.sedml
Simulation Experiment Description Markup Language (SED-ML)
Cli_Ko_analysis.png
Cli_Ko.eps
Cli_Ko.fig
Cli_Ko.jpg
Cli_Ko.ps
Eq.mat
Ko_Cli.auto
AUTO
Ko_Cli.dat
Other format
Ko_Cli.m
Ko_Cli.mat
Ko_bif.mat
Ko.auto
Ko.dat
Ko.eps
Ko.fig
Ko.jpg
Ko.m
Ko.mat
Ko.ps
NORM_KCC2(+)_5Hz.jpg
PATH_KCC2(-)_5Hz.jpg
bursting_duration.eps
bursting_duration.fig
bursting_duration.mat
KCC2(-).pdf
Adobe Illustrator Artwork (AI)
Bazh_Ko_Cli_altKCC2_NORM_EX.m
Bazh_SN.mat
M_diff.m
Net_bursters_no_connection_freq.m
Net_bursters_no_connection.m
norm_processing.m
path_processing.m
plot_square_VE_VI_Ko_Cli.m
SN_fit.fig
SN_fit.jpg
SN_fit.mat
SN_fit.sfit
Bazh_Ko_Cli_diff_net_PATH_0.jpg
Bazh_Ko_Cli_diff_net_PATH_1.jpg
Bazh_Ko_Cli_diff_net_PATH_2.jpg
Bazh_Ko_Cli_diff_net_PATH_3.jpg
Bazh_Ko_Cli_diff_net_PATH_4.jpg
Bazh_Ko_Cli_diff_net_PATH_5.jpg
Bazh_Ko_Cli_diff_net_PATH_6.jpg
Bazh_Ko_Cli_diff_net_PATH_7.jpg
Bazh_Ko_Cli_diff_net_PATH_8.jpg
Bazh_Ko_Cli_diff_net_PATH_9.jpg
Bazh_Ko_Cli_diff_net_PATH_10.jpg
Bazh_Ko_Cli_diff_net_PATH.m
parsave.m
Bazh_Ko_Cli_diff_net_NORM_0.jpg
Bazh_Ko_Cli_diff_net_NORM_1.jpg
Bazh_Ko_Cli_diff_net_NORM_2.jpg
Bazh_Ko_Cli_diff_net_NORM_3.jpg
Bazh_Ko_Cli_diff_net_NORM_4.jpg
Bazh_Ko_Cli_diff_net_NORM_5.jpg
Bazh_Ko_Cli_diff_net_NORM_6.jpg
Bazh_Ko_Cli_diff_net_NORM_7.jpg
Bazh_Ko_Cli_diff_net_NORM_8.jpg
Bazh_Ko_Cli_diff_net_NORM_9.jpg
Bazh_Ko_Cli_diff_net_NORM_10.jpg
Bazh_Ko_Cli_diff_net_NORM.m
Bazh_Ko_Cli_altKCC2_norm_GABA_only.m
Bazh_Ko_Cli_altKCC2_PATH_EX.m
Bazh_Ko_Cli_altKCC2_NORM_EX.jpg
Bazh_Ko_Cli_altKCC2_PATH_EX.jpg
PATH_NORM_Afterdischarge.jpg
T_duration.m
KCC2(-).jpg
KCC2(+).jpg
Norm_10Hz.jpg
Path_10Hz_1.jpg
Path_10Hz.jpg
Bazh_Ko_Cli_altKCC2_norm.jpg
Bazh_Ko_Cli_altKCC2_path.jpg
Fig.2_1_test.jpg
all.jpg
Fig3_new.png
glia_potassium.jpg
IKCC2_(+)_(-).jpg
IKCC2_comparison.jpg
IKCC2_VD_compare.png
noglia.jpg
nopump.jpg
pump_glia_etc.mlx
MATLAB live script
Bazh_potassium.m
VD_comparison.jpg
raster.jpg
Ko_Cli.jpg
PY_IN.eps
PY_IN.jpg
LFP.jpg
spectrum.jpg
Fig.3.jpg
Net_bursters_extKo_PATH_31.m
raster_6.jpg
LFP_model.jpg
LFP_repr.jpg
LFP_spect.jpg
I=0.4.jpg
Fig.6_1.jpg
central_elements.m
KCC2_mat_processing.m
Net_bursters_nobath_fix_ion.m
Net_bursters_nobath_SCRIPT.m
peak_processing.m
spect_peak.m
spect_shift.m
Seizure_frequency.jpg
LFP_time_to.jpg
Time_to_seizure.jpg
gEE_gEI_Frequency_1.png
gEE_gEI_Frequency.jpg
gEE_gIE_Frequency.jpg
gEE_gII_Frequency.jpg
LFP&Cell_E3.jpg
LFP&Cell_E4.jpg
LFP_model_dipole.jpg
LFP_model_full.jpg
LFP_model_syn.jpg
Fig.5_1.jpg
Frequency.jpg
LFP_plot.m
LFP_SYNPAR.m
M_diff_border.m
Net_bursters_extKo_gEE_gEI_SYNPAR.m
spect_scan.m
Net_bursters_extKo_gEE_gIE_SYNPAR.m
border_gEE_gEI.eps
border_gEE_gEI.jpg
raster_scaled_100.png
5_LFP_exp_repr_minimal.jpg
5_LFP_model_repr.jpg
LFP_experiment.jpg
LFP_spect_exp_E3_762_767.jpg
LFP_spect_model.jpg
Fig.7.jpg
KCC2(-)0_LFP.jpg
KCC2(-)5_LFP.jpg
KCC2(-)10_LFP.jpg
KCC2(-)15_LFP.jpg
KCC2(-)20_LFP.jpg
KCC2(-)25_LFP.jpg
KCC2(-)30_LFP.jpg
KCC2(-)35_LFP.jpg
KCC2(-)40_LFP.jpg
KCC2(-)45_LFP.jpg
KCC2(-)50_LFP.jpg
KCC2(-)55_LFP.jpg
KCC2(-)60_LFP.jpg
KCC2(-)65_LFP.jpg
KCC2(-)70_LFP.jpg
KCC2(-)75_LFP.jpg
KCC2(-)80_LFP.jpg
KCC2(-)85_LFP.jpg
KCC2(-)90_LFP.jpg
KCC2(-)95_LFP.jpg
KCC2(-)100_LFP.jpg
Net_bursters_extKo_IN_SCRIPT.m
norm_neurons.jpg
norm_spect.jpg
path_neurons.jpg
seizure_spect.jpg
ions_KCC2_back.jpg
Fig.8.jpg
ions_Ko_Cli.jpg
Net_bursters_nobath_40.m
raster_E_I.jpg
raster_0-10.jpg
raster_40-50.jpg
metadata.rdf
OMEX Metadata