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Project
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Open Modeling and Exchange (OMEX)
Outputs
JavaScript Object Notation (JSON) in BioSimulators simulator schema
Zip of HDF5 and PDF files
Log
JavaScript Object Notation (JSON) in BioSimulators log schema
modeldb:189344
Gregory Handy, Marsa Taheri, John A. White & Alla Borisyuk. Mathematical investigation of IP<sub>3</sub>-dependent calcium dynamics in astrocytes. Journal of Computational Neuroscience 42, 3: 257-273 (2017).
Uniform time course
explicit fourth-order Runge-Kutta method
XPP
SED-ML
COMBINE/OMEX
XPP 8.0
621d42b687550e369891bb60
Glia
Ca pump
I_SERCA
I Calcium
IP3
Calcium dynamics
Oscillations
Bifurcation
ModelDB
Sense Lab at Yale University
Jonathan R. Karr
View project essentials in the liteweight Reproducibility Portal.
autoRespTypeDetection_TH.m
MATLAB
ca_bifurcation_xpp_TH.ode
ca_bifurcation_xpp_TH.sedml
Simulation Experiment Description Markup Language (SED-ML)
example_ca_sim_TH.m
all_ip3_panel1.fig
MATLAB figure
all_ip3_panel2.fig
all_ip3_panel3.fig
low_ip3_panel1.fig
low_ip3_panel2.fig
low_ip3_panel3.fig
metadata.rdf
OMEX Metadata
README.txt
TEXT
CaRiseAndDecay_TH.m
FourCaResponseTypes_TH.m
GenerateLegend_TH.m
ip_function_TH.m
IP3Dyn_model_TH.m
Official_Params_TH.m
Paper_Ca_ODE_TH.m
PeakLatency_TH.m
PeaksAndTroughs_TH.m
plotCa_TH.m
plotCaAmountVsIP3Amount_TH.m
RunParallelFunc_TH.m