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Project
Download File
Open Modeling and Exchange (OMEX)
Outputs
JavaScript Object Notation (JSON) in BioSimulators simulator schema
Zip of HDF5 and PDF files
Log
JavaScript Object Notation (JSON) in BioSimulators log schema
modeldb:152028
Cengiz Günay, Fred H. Sieling, Logesh Dharmar, Wei-Hsiang Lin, Verena Wolfram, Richard Marley, Richard A. Baines & Astrid A. Prinz. Distal spike initiation zone location estimation by morphological simulation of ionic current filtering demonstrated in a novel model of an identified Drosophila motoneuron. PLOS Computational Biology 11, 5: e1004189 (2015).
Uniform time course
Euler forward method
XPP
SED-ML
COMBINE/OMEX
XPP 8.0
621d42b187550e369891badd
Neuron or other electrically excitable cell
I Na,p
I Na,t
I A
I K
Cholinergic Receptors
Drosophila
ModelDB
Sense Lab at Yale University
Jonathan R. Karr
View project essentials in the liteweight Reproducibility Portal.
pcbi.1004189.g001.jpg
Joint Photographic Experts Group (JPEG)
pcbi.1004189.g002.jpg
pcbi.1004189.g003.jpg
pcbi.1004189.g004.jpg
pcbi.1004189.g005.jpg
pcbi.1004189.g006.jpg
pcbi.1004189.g007.jpg
fit.m
MATLAB
get.m
model_data_vcs_Kprepulse.m
plotDataCompare.m
plotModelInfs.m
plotModelTaus.m
plotPeaksCompare.m
selectFitParams.m
set.m
updateModel.m
all_channels.m
Kfs.mat
MATLAB data
metadata.rdf
OMEX Metadata
mosinit.hoc
High Order Calculator (HOC)
aCC-L3-neuron-swc.hoc
aCC-L3-neuron.hoc
aCC-L3-neuron+electrode.xml
NeuroML
calc-impedance.hoc
chan-DmKA-Marley.hoc
chan-DmKdr-Marley.hoc
chan-DmNaP-DmNav10.hoc
chan-DmNaT-ODowd.hoc
collapse-neuron-tree.hoc
current-inj-50pA-read-mV_dt_0.025ms.bin
Other format
data-axon-tail2-axon-50um-vc-noKdr-long-back-85mV-Na_4_lines_dt_0.025000ms.bin
data-axon-tail2-axon-70um-vc-noKdr-long-back-85mV-Na_4_lines_dt_0.025000ms.bin
data-axon-tail2-axon-70um-vc-noKdr-long-back-85mV-Na-5xNaP_4_lines_dt_0.025000ms.bin
data-axon-tail2-axon-70um-vc-noKdr-long-back-85mV-Na-5xNaT_4_lines_dt_0.025000ms.bin
data-axon-tail2-axon-70um-vc-noKdr-long-back-85mV-passive_4_lines_dt_0.025000ms.bin
data-axon-tail2-chans-axon_11_lines_dt_0.025000ms.bin
data-axon-tail2-chans-axon-last_11_lines_dt_0.025000ms.bin
data-axon-tail2-chans-botdend_11_lines_dt_0.025000ms.bin
data-axon-tail2-chans-ext-axon-70um_11_lines_dt_0.025000ms.bin
data-axon-tail2-chans-in-all_11_lines_dt_0.025000ms.bin
data-i-syn-4dends-50-EPSCs-10x-10ms-VC-60mV_5_lines_dt_0.025000ms.bin
data-i-syn-10syns-20-EPSCs-10x-10ms-VC-60mV_6_lines_dt_0.025000ms.bin
data-i-vclamp-syn-dend-513-180-EPSCs-10x-1ms-saturating_2_lines_dt_0.025000ms.bin
data-syn-dend-357_2_lines_dt_0.025000ms.bin
data-syn-dend-513_2_lines_dt_0.025000ms.bin
data-syn-dend-520_2_lines_dt_0.025000ms.bin
data-syn-dend-685_2_lines_dt_0.025000ms.bin
data-v-syn-4dends-50-EPSCs-10x-10ms-noVC_6_lines_dt_0.025000ms.bin
data-v-syn-10dends-20-EPSCs-10x-10ms-noVC_6_lines_dt_0.025000ms.bin
data-v-syn-dend-513-180-EPSCs-10x-1ms-saturating-noVC_5_lines_dt_0.025000ms.bin
data-v-syn-dend-685-AP_3_lines_dt_0.025000ms.bin
exp-axon-tail2-chans-axon-last.ses
NEURON session
exp-axon-tail2-chans-axon.ses
exp-axon-tail2-chans-botdend.ses
exp-axon-tail2-chans-ext-axon-50um-onlyNa.ses
exp-axon-tail2-chans-ext-axon-70um-10alphasynapses.ses
exp-axon-tail2-chans-ext-axon-70um-10x-mimic-sustained-random.ses
exp-axon-tail2-chans-ext-axon-70um-10x-mimic-sustained.ses
exp-axon-tail2-chans-ext-axon-70um-mimic-synapses-sustained-currents.ses
exp-axon-tail2-chans-ext-axon-70um-mimic-synapses-v-change.ses
exp-axon-tail2-chans-ext-axon-70um-mimic-synapses.ses
exp-axon-tail2-chans-ext-axon-70um-onlyNa.ses
exp-axon-tail2-chans-ext-axon-70um-tomasz.ses
exp-axon-tail2-chans-ext-axon-70um.ses
exp-axon-tail2-chans-in-all.ses
exp-axon-tail2.ses
figures.m
fitfuncs.hoc
graph-i-vc-ext-axon.ses
iclamp-50pA.ses
IClamp-steps.ses
inc-first.ses
lincir-vclamp.hoc
lincir-vclamp.ses
NaP_NaT_data.csv
neuron-CB-act-electrode-embed-IClamp.ses
neuron-CB-ext-axon-2pieces-chans-axon-last.ses
neuron-CB-ext-axon-2pieces-chans-axon.ses
neuron-CB-ext-axon-2pieces-chans-botdend.ses
neuron-CB-ext-axon-2pieces-chans-ext-axon-50um-onlyNa.ses
neuron-CB-ext-axon-2pieces-chans-ext-axon-70um-10alphasynapses.ses
neuron-CB-ext-axon-2pieces-chans-ext-axon-70um-10x-mimic-sustained.ses
neuron-CB-ext-axon-2pieces-chans-ext-axon-70um-mimic-synapses-v-change.ses
neuron-CB-ext-axon-2pieces-chans-ext-axon-70um-mimic-synapses.ses
neuron-CB-ext-axon-2pieces-chans-ext-axon-70um-onlyNa.ses
neuron-CB-ext-axon-2pieces-chans-ext-axon-70um.ses
neuron-CB-ext-axon-2pieces-chans-in-all.ses
neuron-CB-ext-axon-2pieces.ses
neuron-CB-ext-axon.ses
neuron-CB-pas-electrode-embed-fit-pas-VClamp.ses
neuron-CB-pas-electrode-embed-fit-pas.ses
neuron-CB-pas-electrode-embed-IClamp.ses
neuron-CB-pas-electrode-embed-test-axon-hh-chans.ses
neuron-CB-pas-electrode-embed.ses
neuron-CB.ses
neuron-CB+electrode.hoc
neuron-Import3D-CellBuilder.ses
neuron-NL-CellBuilder-pas-electrode.ses
neuron-NL-CellBuilder-pas-Na.ses
neuron-NL-CellBuilder-pas.ses
neuron-NL-CellBuilder.ses
neuron-PointProcessMgr-ext-axon-2pieces-chans-ext-axon-70um-10alphasynapses.ses
nrn-fit-cap-02_dt_0.025000ms_dy_1e-9nA.bin
shape-plot.ses
SkeletonTree_ORR_aCC_48h1_NL.hoc
soma-vclamp-testbed.ses
stats.hoc
v-graph-bigger-axon-2pieces.ses
v-graph-bigger.ses
v-graph.ses
vclamp_-85_to_-25mV.ses
vclamp_soma_-60mV_syn1234.ses
vclamp_soma_-60mV_syni.ses
vclamp_soma_-60mV.ses
vclamp-family.ses
param_act_t.m
setParamV.m
param_act.m
f.m
param_func_compiled.m
binary_op.m
display.m
displayParams.m
displayXPP.m
fHandle.m
fp.m
getParam.m
getParamNames.m
getParamRanges.m
getParams.m
getParamsString.m
getParamsStruct.m
initSolver.m
integrate.m
minus.m
mpower.m
mtimes.m
optimize.m
param_func.m
plot_abstract.m
plus.m
power.m
convertParams2Ratios.m
convertRatios2Params.m
ldsatlins.m
setParam.m
setParams.m
setVmName.m
subsasgn.m
subsref.m
times.m
convertTauFromSpline.m
param_HH_chan_int_v.m
plotInfs.m
plotTaus.m
param_mult.m
setFunc.m
param_spline_func.m
param_tau_v.m
add.m
getVal.m
initVal.m
integratepar.m
setVal.m
setVals.m
solver_int.m
act_inact_cur.m
configure
configure.ac
Autoconf
Contents.m
COPYING
Makefile
Makefile.in
Neocortical Simulator (NCS)
param_Re_Ce_cap_leak_act_int_dt_v.m
param_act_deriv_v.m
param_act_int_v.m
param_cap_leak_2comp_int_t.m
param_cap_leak_int_t.m
param_cap_leak_v_dep_int_t.m
param_func_const.m
param_func_nil.m
param_gmax.m
param_I_2tauh_int_v.m
param_I_int_v.m
param_I_Neurofit.m
param_I_t.m
param_I_v.m
param_Re_Ce_cap_leak_act_int_t.m
param_Rs_cap_leak_int_t.m
param_tau_2sigmoids_v.m
param_tau_exp_v.m
param_tau_skewbell_v.m
param_tau_spline_v.m
README.dist
Markdown
TAGS
test.m
TODO
electrode-ReCe-soma.nrn
Ic_dt_0.025000ms_dy_1e-9nA_vclamp_-70_to_-50_mV.bin
Ic_dt_0.025000ms_dy_1e-9nA_vclamp_-70_to_-90_mV.bin
param_act_deriv_v_test.m
param_act_test.m
param_I_2tauh_int_v_test.m
param_I_int_v_test.m
param_Re_Ce_cap_leak_act_int_t_test.m
param_tau_v_test.m
update_tags
README.html
Hypertext Markup Language (HTML)
calcDelay.m
calcReCm.m
calcReCmCC.m
calcSteadyLeak.m
data_L1_passive.m
getResultsPassiveReCeElec.m
ball-and-stick.ode
ball-and-stick.sedml
Simulation Experiment Description Markup Language (SED-ML)
figure_models.m
figures_common.m
I-range_-6_36-by-2-gaxon=1.2-gKf=1-gaKf=1000-gKs=1-gaKs=50-gNa=85-gNaP=.93-gleak=.3-richard-panel-B.dat
I-range_-6.5_53.5_by-12-gaxon=1.3-gaKf=200-gaKs=700-gNa=180-gNaP=.01-gleak=.05-zi=2.1-eleak=-55-ealeak=-55-Ca=1.8-Cm=10-Ihold=-6.5.dat
I-range_-12_42-by-13-gKs=50-gKf=24-gNa=100-gNaP=.8-c=4-gL=6.8.dat
isopotential.ode
isopotential.sedml
XPP2current_clamp.m
XPPrange2CIPdb.m