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Project
Download File
Open Modeling and Exchange (OMEX)
msb201262-f1.jpg
Joint Photographic Experts Group (JPEG)
msb201262-f2.jpg
msb201262-f3.jpg
msb201262-f4.jpg
msb201262-f5.jpg
msb201262-f6.jpg
metadata.rdf
OMEX Metadata
NNF.c
C source
NNF.m
MATLAB
NNF.ode
XPP
NNF.sedml
Simulation Experiment Description Markup Language (SED-ML)
NNF.xml
Systems Biology Markup Language (SBML)
PNF.c
PNF.m
PNF.ode
PNF.sedml
PNF.xml
README.txt
TEXT
Sim_Clock_Model.nb
Mathematica notebook
SNF.c
SNF.m
SNF.ode
SNF.sedml
SNF.xml
Outputs
JavaScript Object Notation (JSON) in BioSimulators simulator schema
Zip of HDF5 and PDF files
Log
JavaScript Object Notation (JSON) in BioSimulators log schema
modeldb:145800
Jae Kyoung Kim & Daniel B Forger. A mechanism for robust circadian timekeeping via stoichiometric balance. Molecular Systems Biology 8: 630 (2012).
Uniform time course
Numerical Recipes in C "stiff" Rosenbrock method
SED-ML
COMBINE/OMEX
XPP 8.0
621d42add8a14a834cbf3e18
Molecular Network
Suprachiasmatic nucleus (SCN) neuron
Oscillations
Simplified Models
Circadian Rhythms
ModelDB
Sense Lab at Yale University
Jonathan R. Karr
View project essentials in the liteweight Reproducibility Portal.