Browse simulation projects
Browse simulator tools
Browse the docs
View full simulation details including customizable plots, files, logs, and more.
Project
Download File
Open Modeling and Exchange (OMEX)
iPC815.xml
Systems Biology Markup Language (SBML)
LICENSE
TEXT
metadata.rdf
OMEX Metadata
PMC3220653-F1.jpg
Joint Photographic Experts Group (JPEG)
PMC3220653-F2.jpg
PMC3220653-F3.jpg
PMC3220653-F4.jpg
simulation.sedml
Simulation Experiment Description Markup Language (SED-ML)
Outputs
JavaScript Object Notation (JSON) in BioSimulators simulator schema
Zip of HDF5 and PDF files
Log
JavaScript Object Notation (JSON) in BioSimulators log schema
bigg.model:iPC815
Pep Charusanti, Sadhana Chauhan, Kathleen McAteer, Joshua A Lerman, Daniel R Hyduke, Vladimir L Motin, Charles Ansong, Joshua N Adkins & Bernhard O Palsson. An experimentally-supported genome-scale metabolic network reconstruction for Yersinia pestis CO92. BMC Systems Biology 5: 163 (2011).
BiGG
Steady state
flux balance analysis
SBML
SED-ML
COMBINE/OMEX
COBRApy 0.24.0
621da83387550e3698922222
metabolic process
Yersinia pestis CO92, complete sequence
Yersinia pestis CO92
Systems Biology Research Group at the University of California, San Diego
Jonathan R. Karr
View project essentials in the liteweight Reproducibility Portal.