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Project
Download File
Open Modeling and Exchange (OMEX)
iJO1366.Central-metabolism.escher.json
Escher
iJO1366.Central-metabolism.png
Portable Network Graphics (PNG)
iJO1366.Central-metabolism.vg.json
Vega
iJO1366.Fatty-acid-beta-oxidation.escher.json
iJO1366.Fatty-acid-beta-oxidation.png
iJO1366.Fatty-acid-beta-oxidation.vg.json
iJO1366.Fatty-acid-biosynthesis--saturated-.escher.json
iJO1366.Fatty-acid-biosynthesis--saturated-.png
iJO1366.Fatty-acid-biosynthesis--saturated-.vg.json
iJO1366.Nucleotide-and-histidine-biosynthesis.escher.json
iJO1366.Nucleotide-and-histidine-biosynthesis.png
iJO1366.Nucleotide-and-histidine-biosynthesis.vg.json
iJO1366.Nucleotide-metabolism.escher.json
iJO1366.Nucleotide-metabolism.png
iJO1366.Nucleotide-metabolism.vg.json
iML1515.xml
Systems Biology Markup Language (SBML)
LICENSE
TEXT
metadata.rdf
OMEX Metadata
simulation.sedml
Simulation Experiment Description Markup Language (SED-ML)
Outputs
JavaScript Object Notation (JSON) in BioSimulators simulator schema
Zip of HDF5 and PDF files
Log
JavaScript Object Notation (JSON) in BioSimulators log schema
bigg.model:iML1515
Jonathan M Monk, Colton J Lloyd, Elizabeth Brunk, Nathan Mih, Anand Sastry, Zachary King, Rikiya Takeuchi, Wataru Nomura, Zhen Zhang, Hirotada Mori, Adam M Feist & Bernhard O Palsson. iML1515, a knowledgebase that computes Escherichia coli traits. Nature Biotechnology 35, 10: 904-908 (2017).
BiGG
Steady state
flux balance analysis
SBML
SED-ML
COMBINE/OMEX
COBRApy 0.24.0
621d9084d8a14a834cbf76ed
metabolic process
Escherichia coli str. K-12 substr. MG1655, complete genome
Escherichia coli str. K-12 substr. MG1655
Systems Biology Research Group at the University of California, San Diego
Jonathan R. Karr
View project essentials in the liteweight Reproducibility Portal.