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Project
Download File
Open Modeling and Exchange (OMEX)
iECDH10B_1368.xml
Systems Biology Markup Language (SBML)
iJO1366.Central-metabolism.escher.json
Escher
iJO1366.Central-metabolism.png
Portable Network Graphics (PNG)
iJO1366.Central-metabolism.vg.json
Vega
iJO1366.Fatty-acid-beta-oxidation.escher.json
iJO1366.Fatty-acid-beta-oxidation.png
iJO1366.Fatty-acid-beta-oxidation.vg.json
iJO1366.Fatty-acid-biosynthesis--saturated-.escher.json
iJO1366.Fatty-acid-biosynthesis--saturated-.png
iJO1366.Fatty-acid-biosynthesis--saturated-.vg.json
iJO1366.Nucleotide-and-histidine-biosynthesis.escher.json
iJO1366.Nucleotide-and-histidine-biosynthesis.png
iJO1366.Nucleotide-and-histidine-biosynthesis.vg.json
iJO1366.Nucleotide-metabolism.escher.json
iJO1366.Nucleotide-metabolism.png
iJO1366.Nucleotide-metabolism.vg.json
LICENSE
TEXT
metadata.rdf
OMEX Metadata
simulation.sedml
Simulation Experiment Description Markup Language (SED-ML)
Outputs
JavaScript Object Notation (JSON) in BioSimulators simulator schema
Zip of HDF5 and PDF files
Log
JavaScript Object Notation (JSON) in BioSimulators log schema
bigg.model:iECDH10B_1368
J. M. Monk, P. Charusanti, R. K. Aziz, J. A. Lerman, N. Premyodhin, J. D. Orth, A. M. Feist & B. O. Palsson. Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments. Proceedings of the National Academy of Sciences 110, 50: 20338-20343 (2013).
BiGG
Steady state
flux balance analysis
SBML
SED-ML
COMBINE/OMEX
COBRApy 0.24.0
621da82fb50991044c7a30c9
metabolic process
Escherichia coli str. K12 substr. DH10B, complete genome
Escherichia coli str. K-12 substr. DH10B
Systems Biology Research Group at the University of California, San Diego
Jonathan R. Karr
View project essentials in the liteweight Reproducibility Portal.