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Project
Download File
Open Modeling and Exchange (OMEX)
Outputs
JavaScript Object Notation (JSON) in BioSimulators simulator schema
Zip of HDF5 and PDF files
Log
JavaScript Object Notation (JSON) in BioSimulators log schema
smoldyn:S8_reactions/lotvolt/lotvolt.txt
Steven S. Andrews. Smoldyn: particle-based simulation with rule-based modeling, improved molecular interaction and a library interface. Bioinformatics 33, 5 (2017): 710-717.
GPL-3.0-only
Uniform time course
Brownian diffusion Smoluchowski method
Smoldyn
SED-ML
COMBINE/OMEX
Smoldyn 2.67.2
61fea4933c41b662ca49b3d8
BioSimulations
Jonathan Karr
View project essentials in the liteweight Reproducibility Portal.
expected-results.json
JavaScript Object Notation (JSON)
metadata.rdf
OMEX Metadata
model.txt
Smoldyn simulation configuration language (Smoldyn)
reports.h5
Hierarchical Data Format 5 (HDF5)
simulation.sedml
Simulation Experiment Description Markup Language (SED-ML)