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Project
Download File
Open Modeling and Exchange (OMEX)
expected-results.json
JavaScript Object Notation (JSON)
metadata.rdf
OMEX Metadata
model.txt
Smoldyn simulation configuration language (Smoldyn)
reports.h5
Hierarchical Data Format 5 (HDF5)
simulation.sedml
Simulation Experiment Description Markup Language (SED-ML)
Outputs
JavaScript Object Notation (JSON) in BioSimulators simulator schema
Zip of HDF5 and PDF files
Log
JavaScript Object Notation (JSON) in BioSimulators log schema
smoldyn:S8_reactions/lotvolt/lotvolt.txt
Steven S. Andrews. Smoldyn: particle-based simulation with rule-based modeling, improved molecular interaction and a library interface. Bioinformatics 33, 5 (2017): 710-717.
GPL-3.0-only
Uniform time course
Brownian diffusion Smoluchowski method
Smoldyn
SED-ML
COMBINE/OMEX
Smoldyn 2.67.2
61fea4933c41b662ca49b3d8
BioSimulations
Jonathan Karr
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