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Project
Download File
Open Modeling and Exchange (OMEX)
data.zip
Zip
expected-results.json
JavaScript Object Notation (JSON)
FigureS13.jpg
Joint Photographic Experts Group (JPEG)
flux-map.escher.json
Escher
flux-map.vg.json
Vega
metadata.rdf
OMEX Metadata
model.zip
Resource Balance Analysis XML format (RBA XML)
reports.h5
Hierarchical Data Format 5 (HDF5)
simulation.sedml
Simulation Experiment Description Markup Language (SED-ML)
Outputs
JavaScript Object Notation (JSON) in BioSimulators simulator schema
Zip of HDF5 and PDF files
Log
JavaScript Object Notation (JSON) in BioSimulators log schema
github:SysBioInra/Bacterial-RBA-models/tree/master/Escherichia-coli-K12-WT
Ana Bulović, Stephan Fischer, Marc Dinh, Felipe Golib, Wolfram Liebermeister, Christian Poirier, Laurent Tournier, Edda Klipp, Vincent Fromion & Anne Goelzer. Automated generation of bacterial resource allocation models. Metabolic Engineering 55 (2019): 12-22.
GPL-3.0-or-later
Steady state
Resource Balance Analysis
RBA XML
SED-ML
COMBINE/OMEX
RBApy 1.0.2
61fea4888c1e3dc95a798006
Escherichia coli K-12
Jeffrey D Orth, Tom M Conrad, Jessica Na, Joshua A Lerman, Hojung Nam, Adam M Feist & Bernhard Ø Palsson. A comprehensive genome-scale reconstruction of Escherichia coli metabolism—2011. Molecular Systems Biology 7 (2011): 535.
BioSimulations
Jonathan Karr
View project essentials in the liteweight Reproducibility Portal.