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Project
Download File
Open Modeling and Exchange (OMEX)
Outputs
JavaScript Object Notation (JSON) in BioSimulators simulator schema
Zip of HDF5 and PDF files
Log
JavaScript Object Notation (JSON) in BioSimulators log schema
github:opencobra/cobrapy/src/cobra/test/data/textbook.xml.gz
Ali Ebrahim, Joshua A Lerman, Bernhard O Palsson & Daniel R Hyduke. COBRApy: COnstraints-Based Reconstruction and Analysis for Python. BMC Syst Biol 7 (2013): 74.
GPL-2.0
Steady state
flux balance analysis
SBML
SED-ML
COMBINE/OMEX
COBRApy 0.22.1
61fea4878edd56f301e6a7ed
Escherichia coli
BioSimulations
Jonathan Karr
View project essentials in the liteweight Reproducibility Portal.
expected-results.json
JavaScript Object Notation (JSON)
flux-map.escher.json
Escher
flux-map.vg.json
Vega
metadata.rdf
OMEX Metadata
model.xml
Systems Biology Markup Language (SBML)
reports.h5
Hierarchical Data Format 5 (HDF5)
simulation.sedml
Simulation Experiment Description Markup Language (SED-ML)