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Project
Download File
Open Modeling and Exchange (OMEX)
expected-results.json
JavaScript Object Notation (JSON)
flux-map.escher.json
Escher
flux-map.vg.json
Vega
metadata.rdf
OMEX Metadata
model.xml
Systems Biology Markup Language (SBML)
reports.h5
Hierarchical Data Format 5 (HDF5)
simulation.sedml
Simulation Experiment Description Markup Language (SED-ML)
Outputs
JavaScript Object Notation (JSON) in BioSimulators simulator schema
Zip of HDF5 and PDF files
Log
JavaScript Object Notation (JSON) in BioSimulators log schema
github:opencobra/cobrapy/src/cobra/test/data/textbook.xml.gz
Ali Ebrahim, Joshua A Lerman, Bernhard O Palsson & Daniel R Hyduke. COBRApy: COnstraints-Based Reconstruction and Analysis for Python. BMC Syst Biol 7 (2013): 74.
GPL-2.0
Steady state
flux balance analysis
SBML
SED-ML
COMBINE/OMEX
COBRApy 0.22.1
61fea4878edd56f301e6a7ed
Escherichia coli
BioSimulations
Jonathan Karr
View project essentials in the liteweight Reproducibility Portal.