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Project
Download File
Open Modeling and Exchange (OMEX)
Outputs
JavaScript Object Notation (JSON) in BioSimulators simulator schema
Zip of HDF5 and PDF files
Log
JavaScript Object Notation (JSON) in BioSimulators log schema
Jukka Intosalmi, Helena Ahlfors, Sini Rautio, Henrik Mannerstöm, Zhi Jane Chen, Riitta Lahesmaa, Brigitta Stockinger & Harri Lähdesmäki. Analyzing Th17 cell differentiation dynamics using a novel integrative modeling framework for time-course RNA sequencing data. BMC Systems Biology 9 (2015).
Uniform time course
LSODA/LSODAR hybrid method
SBML
SED-ML
COMBINE/OMEX
AMICI 0.11.25
647a4b930fb37cdb9ae73a5b
BioModels
View project essentials in the liteweight Reproducibility Portal.
12918_2015_223_MOESM2_ESM-biopax2.owl
Resource Description Framework XML (RDF-XML)
12918_2015_223_MOESM2_ESM-biopax3.owl
12918_2015_223_MOESM2_ESM-matlab.m
MATLAB
12918_2015_223_MOESM2_ESM-octave.m
12918_2015_223_MOESM2_ESM.ode
12918_2015_223_MOESM2_ESM.xml
Systems Biology Markup Language (SBML)
curation_image.png
Portable Network Graphics (PNG)
curation_notes.txt
TEXT
Intosalmi2015-biopax2.owl
Intosalmi2015-biopax3.owl
Intosalmi2015-matlab.m
Intosalmi2015-octave.m
Intosalmi2015.cps
COPASI Markup Language (CopasiML)
Intosalmi2015.ode
Intosalmi2015.sedml
Simulation Experiment Description Markup Language (SED-ML)
Intosalmi2015.xml
metadata.rdf
OMEX Metadata