Browse simulation projects
Browse simulator tools
Browse the docs
View full simulation details including customizable plots, files, logs, and more.
Project
Download File
Open Modeling and Exchange (OMEX)
curation_image.png
Portable Network Graphics (PNG)
curation_notes.txt
TEXT
Figure_5A_class2-biopax2.owl
Resource Description Framework XML (RDF-XML)
Figure_5A_class2-biopax3.owl
Figure_5A_class2-matlab.m
MATLAB
Figure_5A_class2-octave.m
Figure_5A_class2.ode
Figure_5A_class2.xml
Systems Biology Markup Language (SBML)
metadata.rdf
OMEX Metadata
MODEL1712050008-biopax2.owl
MODEL1712050008-biopax3.owl
MODEL1712050008-matlab.m
MODEL1712050008-octave.m
MODEL1712050008.cps
COPASI Markup Language (CopasiML)
MODEL1712050008.ode
MODEL1712050008.sedml
Simulation Experiment Description Markup Language (SED-ML)
MODEL1712050008.xml
Outputs
JavaScript Object Notation (JSON) in BioSimulators simulator schema
Zip of HDF5 and PDF files
Log
JavaScript Object Notation (JSON) in BioSimulators log schema
Jette Strasen, Uddipan Sarma, Marcel Jentsch, Stefan Bohn, Caibin Sheng, Daniel Horbelt, Petra Knaus, Stefan Legewie & Alexander Loewer. Cell-specific responses to the cytokine TGFβ are determined by variability in protein levels. Molecular Systems Biology 14, 1 (2018).
Uniform time course
LSODA/LSODAR hybrid method
SBML
SED-ML
COMBINE/OMEX
tellurium 2.2.8
647a5cb277b6669655063256
BioModels
View project essentials in the liteweight Reproducibility Portal.