Browse simulation projects
Browse simulator tools
Browse the docs
View full simulation details including customizable plots, files, logs, and more.
Project
Download File
Open Modeling and Exchange (OMEX)
curation_image.png
Portable Network Graphics (PNG)
curation_notes.txt
TEXT
Gulbudak2019.1.Lytic-biopax2.owl
Resource Description Framework XML (RDF-XML)
Gulbudak2019.1.Lytic-biopax3.owl
Gulbudak2019.1.Lytic-matlab.m
MATLAB
Gulbudak2019.1.Lytic-octave.m
Gulbudak2019.1.Lytic.cps
COPASI Markup Language (CopasiML)
Gulbudak2019.1.Lytic.ode
Gulbudak2019.1.Lytic.sedml
Simulation Experiment Description Markup Language (SED-ML)
Gulbudak2019.1.Lytic.xml
Systems Biology Markup Language (SBML)
metadata.rdf
OMEX Metadata
Outputs
JavaScript Object Notation (JSON) in BioSimulators simulator schema
Zip of HDF5 and PDF files
Log
JavaScript Object Notation (JSON) in BioSimulators log schema
Hayriye Gulbudak & Joshua S. Weitz. Heterogeneous viral strategies promote coexistence in virus-microbe systems. Journal of Theoretical Biology 462 (2019).
Uniform time course
LSODA/LSODAR hybrid method
SBML
SED-ML
COMBINE/OMEX
COPASI 4.36.260
64711de00dcacb55678d0190
BioModels
View project essentials in the liteweight Reproducibility Portal.