Browse simulation projects
Browse simulator tools
Browse the docs
View full simulation details including customizable plots, files, logs, and more.
Project
Download File
Open Modeling and Exchange (OMEX)
BIOMD0000000734-biopax2.owl
Resource Description Framework XML (RDF-XML)
BIOMD0000000734-biopax3.owl
BIOMD0000000734-matlab.m
MATLAB
BIOMD0000000734-octave.m
BIOMD0000000734.ode
BIOMD0000000734.xml
Systems Biology Markup Language (SBML)
curation_image.png
Portable Network Graphics (PNG)
curation_notes.txt
TEXT
Fig4_all.png
metadata.rdf
OMEX Metadata
Parmar2017_Deficient_Rich_tracer.cps
COPASI Markup Language (CopasiML)
Parmar2017_Deficient_Rich_tracer.sedml
Simulation Experiment Description Markup Language (SED-ML)
Outputs
JavaScript Object Notation (JSON) in BioSimulators simulator schema
Zip of HDF5 and PDF files
Log
JavaScript Object Notation (JSON) in BioSimulators log schema
Tiago JS Lopes, Tatyana Luganskaja, Maja Vujić Spasić, Matthias W Hentze, Martina U Muckenthaler, Klaus Schümann & Jens G Reich. Systems analysis of iron metabolism: the network of iron pools and fluxes. BMC Systems Biology 4 (2010).
Uniform time course
LSODA/LSODAR hybrid method
SBML
SED-ML
COMBINE/OMEX
tellurium 2.2.8
647a4b5877b6669655061136
BioModels
View project essentials in the liteweight Reproducibility Portal.