Browse simulation projects
Browse simulator tools
Browse the docs
View full simulation details including customizable plots, files, logs, and more.
Project
Download File
Open Modeling and Exchange (OMEX)
Bakum1832.cps
COPASI Markup Language (CopasiML)
Bakum1832.sedml
Simulation Experiment Description Markup Language (SED-ML)
curation_image.png
Portable Network Graphics (PNG)
curation_notes.txt
TEXT
Jena2688.cps
Jena2688.sedml
Jena5258-biopax2.owl
Resource Description Framework XML (RDF-XML)
Jena5258-biopax3.owl
Jena5258-matlab.m
MATLAB
Jena5258-octave.m
Jena5258.cps
Jena5258.ode
Jena5258.sedml
Jena5258.xml
Systems Biology Markup Language (SBML)
Jena5555.cps
Jena5555.sedml
metadata.rdf
OMEX Metadata
Outputs
JavaScript Object Notation (JSON) in BioSimulators simulator schema
Zip of HDF5 and PDF files
Log
JavaScript Object Notation (JSON) in BioSimulators log schema
Himanshu Manchanda, Nora Seidel, Andi Krumbholz, Andreas Sauerbrei, Michaela Schmidtke & Reinhard Guthke. Within-host influenza dynamics: a small-scale mathematical modeling approach. Biosystems 118 (2014).
Uniform time course
LSODA/LSODAR hybrid method
SBML
SED-ML
COMBINE/OMEX
tellurium 2.2.8
647a4b510fb37cdb9ae7348c
BioModels
View project essentials in the liteweight Reproducibility Portal.