Browse simulation projects
Browse simulator tools
Browse the docs
View full simulation details including customizable plots, files, logs, and more.
Project
Download File
Open Modeling and Exchange (OMEX)
Outputs
JavaScript Object Notation (JSON) in BioSimulators simulator schema
Zip of HDF5 and PDF files
Log
JavaScript Object Notation (JSON) in BioSimulators log schema
Dominik Wodarz, Sophie Sierro & Paul Klenerman. Dynamics of killer T cell inflation in viral infections. Journal of The Royal Society Interface 4, 14 (2007).
Dominik Wodarz & Allan Randrup Thomsen. Effect of the CTL proliferation program on virus dynamics. International Immunology 17, 9 (2005).
Uniform time course
LSODA/LSODAR hybrid method
SBML
SED-ML
COMBINE/OMEX
COPASI 4.36.260
64711c3a49c0d898ffdf24bc
BioModels
View project essentials in the liteweight Reproducibility Portal.
BIOMD0000000688_url.xml
Systems Biology Markup Language (SBML)
BIOMD0000000688-biopax2.owl
Resource Description Framework XML (RDF-XML)
BIOMD0000000688-biopax3.owl
BIOMD0000000688-matlab.m
MATLAB
BIOMD0000000688.m
BIOMD0000000688.ode
BIOMD0000000688.pdf
Portable Document Format (PDF)
BIOMD0000000688.png
Portable Network Graphics (PNG)
BIOMD0000000688.svg
Scalable Vector Graphics (SVG)
curation_image.png
curation_notes.txt
TEXT
metadata.rdf
OMEX Metadata
MODEL1006230097.cps
COPASI Markup Language (CopasiML)
MODEL1006230097.sedml
Simulation Experiment Description Markup Language (SED-ML)