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Project
Download File
Open Modeling and Exchange (OMEX)
Outputs
JavaScript Object Notation (JSON) in BioSimulators simulator schema
Zip of HDF5 and PDF files
Log
JavaScript Object Notation (JSON) in BioSimulators log schema
Jörg Schaber, Miquel Àngel Adrover, Emma Eriksson, Serge Pelet, Elzbieta Petelenz-Kurdziel, Dagmara Klein, Francesc Posas, Mattias Goksör, Mathias Peter, Stefan Hohmann & Edda Klipp. Biophysical properties of Saccharomyces cerevisiae and their relationship with HOG pathway activation. European Biophysics Journal 39, 11 (2010).
Jörg Schaber & Edda Klipp. Short-term volume and turgor regulation in yeast. Essays in Biochemistry 45 (2008).
Elzbieta Petelenz-Kurdziel, Clemens Kuehn, Bodil Nordlander, Dagmara Klein, Kuk-Ki Hong, Therese Jacobson, Peter Dahl, Jörg Schaber, Jens Nielsen, Stefan Hohmann & Edda Klipp. Quantitative analysis of glycerol accumulation, glycolysis and growth under hyper osmotic stress. PLoS Computational Biology 9, 6 (2013).
Edda Klipp, Bodil Nordlander, Roland Krüger, Peter Gennemark & Stefan Hohmann. Integrative model of the response of yeast to osmotic shock. Nature Biotechnology 23, 8 (2005).
Bas Teusink, Jutta Passarge, Corinne A. Reijenga, Eugenia Esgalhado, Coen C. van der Weijden, Mike Schepper, Michael C. Walsh, Barbara M. Bakker, Karel van Dam, Hans V. Westerhoff & Jacky L. Snoep. Can yeast glycolysis be understood in terms of in vitro kinetics of the constituent enzymes? Testing biochemistry. European Journal of Biochemistry 267, 17 (2000).
Uniform time course
LSODA/LSODAR hybrid method
SBML
SED-ML
COMBINE/OMEX
tellurium 2.2.8
64711b089a62a8be53f8af6e
BioModels
View project essentials in the liteweight Reproducibility Portal.
BIOMD0000000606_url.xml
Systems Biology Markup Language (SBML)
BIOMD0000000606-biopax2.owl
Resource Description Framework XML (RDF-XML)
BIOMD0000000606-biopax3.owl
BIOMD0000000606-matlab.m
MATLAB
BIOMD0000000606-octave.m
BIOMD0000000606.m
BIOMD0000000606.ode
BIOMD0000000606.png
Portable Network Graphics (PNG)
BIOMD0000000606.svg
Scalable Vector Graphics (SVG)
curation_image.png
curation_notes.txt
TEXT
metadata.rdf
OMEX Metadata
MODEL1204190003.cps
COPASI Markup Language (CopasiML)
MODEL1204190003.sedml
Simulation Experiment Description Markup Language (SED-ML)