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Project
Download File
Open Modeling and Exchange (OMEX)
Outputs
JavaScript Object Notation (JSON) in BioSimulators simulator schema
Zip of HDF5 and PDF files
Log
JavaScript Object Notation (JSON) in BioSimulators log schema
Anna Flis, Aurora Piñas Fernández, Tomasz Zielinski, Virginie Mengin, Ronan Sulpice, Kevin Stratford, Alastair Hume, Alexandra Pokhilko, Megan M. Southern, Daniel D. Seaton, Harriet G. McWatters, Mark Stitt, Karen J. Halliday & Andrew J. Millar. Defining the robust behaviour of the plant clock gene circuit with absolute RNA timeseries and open infrastructure. Open Biology 5, 10 (2015).
Uniform time course
CVODE
SBML
SED-ML
COMBINE/OMEX
COPASI 4.36.260
64711ae39a62a8be53f8ad18
BioModels
View project essentials in the liteweight Reproducibility Portal.
BIOMD0000000597_url.sedml
Simulation Experiment Description Markup Language (SED-ML)
BIOMD0000000597_url.xml
Systems Biology Markup Language (SBML)
BIOMD0000000597-biopax2.owl
Resource Description Framework XML (RDF-XML)
BIOMD0000000597-biopax3.owl
BIOMD0000000597-matlab.m
MATLAB
BIOMD0000000597-octave.m
BIOMD0000000597.m
BIOMD0000000597.ode
BIOMD0000000597.pdf
Portable Document Format (PDF)
BIOMD0000000597.png
Portable Network Graphics (PNG)
BIOMD0000000597.svg
Scalable Vector Graphics (SVG)
curation_image.png
curation_notes.txt
TEXT
metadata.rdf
OMEX Metadata