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Project
Download File
Open Modeling and Exchange (OMEX)
Outputs
JavaScript Object Notation (JSON) in BioSimulators simulator schema
Zip of HDF5 and PDF files
Log
JavaScript Object Notation (JSON) in BioSimulators log schema
Casandra W. Philipson, Josep Bassaganya-Riera, Monica Viladomiu, Barbara Kronsteiner, Vida Abedi, Stefan Hoops, Pawel Michalak, Lin Kang, Stephen E. Girardin & Raquel Hontecillas. Modeling the Regulatory Mechanisms by Which NLRX1 Modulates Innate Immune Responses to Helicobacter pylori Infection. PLOS ONE 10, 9 (2015).
Uniform time course
LSODA/LSODAR hybrid method
SBML
SED-ML
COMBINE/OMEX
tellurium 2.2.8
64711adb49c0d898ffdf01d4
BioModels
View project essentials in the liteweight Reproducibility Portal.
curation_image.png
Portable Network Graphics (PNG)
curation_notes.txt
TEXT
metadata.rdf
OMEX Metadata
Philipson2015-biopax2.owl
Resource Description Framework XML (RDF-XML)
Philipson2015-biopax3.owl
Philipson2015-matlab.m
MATLAB
Philipson2015-octave.m
Philipson2015.cps
COPASI Markup Language (CopasiML)
Philipson2015.ode
Philipson2015.sedml
Simulation Experiment Description Markup Language (SED-ML)
Philipson2015.xml
Systems Biology Markup Language (SBML)