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Project
Download File
Open Modeling and Exchange (OMEX)
BIOMD0000000572_url.xml
Systems Biology Markup Language (SBML)
BIOMD0000000572-biopax2.owl
Resource Description Framework XML (RDF-XML)
BIOMD0000000572-biopax3.owl
BIOMD0000000572-matlab.m
MATLAB
BIOMD0000000572-octave.m
BIOMD0000000572.m
BIOMD0000000572.ode
BIOMD0000000572.pdf
Portable Document Format (PDF)
BIOMD0000000572.png
Portable Network Graphics (PNG)
BIOMD0000000572.svg
Scalable Vector Graphics (SVG)
Costa2014.cps
COPASI Markup Language (CopasiML)
Costa2014.sedml
Simulation Experiment Description Markup Language (SED-ML)
curation_image.png
curation_notes.txt
TEXT
metadata.rdf
OMEX Metadata
Outputs
JavaScript Object Notation (JSON) in BioSimulators simulator schema
Zip of HDF5 and PDF files
Log
JavaScript Object Notation (JSON) in BioSimulators log schema
Marcel H. N. Hoefnagel, Marjo J. C. Starrenburg, Dirk E. Martens, Jeroen Hugenholtz, Michiel Kleerebezem, Iris I. Van Swam, Roger Bongers, Hans V. Westerhoff & Jacky L. Snoep. Metabolic engineering of lactic acid bacteria, the combined approach: kinetic modelling, metabolic control and experimental analysis. Microbiology 148, Pt 4 (2002).
Albert T. Brown & Robert D. Bowles. Polyol metabolism by a caries-conducive Streptococcus: purification and properties of a nicotinamide adenine dinucleotide-dependent mannitol-1-phosphate dehydrogenase. Infection and Immunity 16, 1 (1977).
Paula Gaspar, Ana Rute Neves, Ana Ramos, Michael J. Gasson, Claire A. Shearman & Helena Santos. Engineering Lactococcus lactis for production of mannitol: high yields from food-grade strains deficient in lactate dehydrogenase and the mannitol transport system. Applied and Environmental Microbiology 70, 3 (2004).
Rafael S. Costa, Andras Hartmann, Paula Gaspar, Ana R. Neves & Susana Vinga. An extended dynamic model of Lactococcus lactis metabolism for mannitol and 2,3-butanediol production. Molecular BioSystems 10, 3 (2014).
Johan Palmfeldt, Marco Paese, Bärbel Hahn-Hägerdal & Ed W. J. van Niel. The pool of ADP and ATP regulates anaerobic product formation in resting cells of Lactococcus lactis. Applied and Environmental Microbiology 70, 9 (2004).
Jennifer Levering, Mark W. J. M. Musters, Martijn Bekker, Domenico Bellomo, Tomas Fiedler, Willem M. de Vos, Jeroen Hugenholtz, Bernd Kreikemeyer, Ursula Kummer & Bas Teusink. Role of phosphate in the central metabolism of two lactic acid bacteria--a comparative systems biology approach. FEBS Journal 279, 7 (2012).
Paula Gaspar, Ana Rute Neves, Michael J. Gasson, Claire A. Shearman & Helena Santos. High yields of 2,3-butanediol and mannitol in Lactococcus lactis through engineering of NAD⁺ cofactor recycling. Applied and Environmental Microbiology 77, 19 (2011).
Uniform time course
LSODA/LSODAR hybrid method
SBML
SED-ML
COMBINE/OMEX
tellurium 2.2.8
647111d20dcacb55678c967c
BioModels
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