Browse simulation projects
Browse simulator tools
Browse the docs
View full simulation details including customizable plots, files, logs, and more.
Project
Download File
Open Modeling and Exchange (OMEX)
Outputs
JavaScript Object Notation (JSON) in BioSimulators simulator schema
Zip of HDF5 and PDF files
Log
JavaScript Object Notation (JSON) in BioSimulators log schema
Stephanie Mueller, Jérémy Huard, Katharina Waldow, Xiaoyun Huang, Lorenza A D'Alessandro, Sebastian Bohl, Kathleen Börner, Dirk Grimm, Steffen Klamt, Ursula Klingmüller & Marcel Schilling. T160‐phosphorylated CDK2 defines threshold for HGF dependent proliferation in primary hepatocytes. Molecular Systems Biology 11, 3 (2015).
Uniform time course
LSODA/LSODAR hybrid method
SBML
SED-ML
COMBINE/OMEX
tellurium 2.2.8
647111be9a62a8be53f89ea4
BioModels
View project essentials in the liteweight Reproducibility Portal.
BIOMD0000000568_PottersWheel.m
MATLAB
BIOMD0000000568_url.xml
Systems Biology Markup Language (SBML)
BIOMD0000000568-biopax2.owl
Resource Description Framework XML (RDF-XML)
BIOMD0000000568-biopax3.owl
BIOMD0000000568-matlab.m
BIOMD0000000568-octave.m
BIOMD0000000568.m
BIOMD0000000568.ode
BIOMD0000000568.pdf
Portable Document Format (PDF)
BIOMD0000000568.png
Portable Network Graphics (PNG)
BIOMD0000000568.svg
Scalable Vector Graphics (SVG)
curation_image.png
curation_notes.txt
TEXT
metadata.rdf
OMEX Metadata
Mueller2015.cps
COPASI Markup Language (CopasiML)
Mueller2015.sedml
Simulation Experiment Description Markup Language (SED-ML)