Browse simulation projects
Browse simulator tools
Browse the docs
View full simulation details including customizable plots, files, logs, and more.
Project
Download File
Open Modeling and Exchange (OMEX)
BIOMD0000000559_url.xml
Systems Biology Markup Language (SBML)
BIOMD0000000559-biopax2.owl
Resource Description Framework XML (RDF-XML)
BIOMD0000000559-biopax3.owl
BIOMD0000000559-matlab.m
MATLAB
BIOMD0000000559-octave.m
BIOMD0000000559.m
BIOMD0000000559.ode
BIOMD0000000559.pdf
Portable Document Format (PDF)
BIOMD0000000559.png
Portable Network Graphics (PNG)
BIOMD0000000559.svg
Scalable Vector Graphics (SVG)
curation_image.png
curation_notes.txt
TEXT
metadata.rdf
OMEX Metadata
Ouzounoglou2014.cps
COPASI Markup Language (CopasiML)
Ouzounoglou2014.sedml
Simulation Experiment Description Markup Language (SED-ML)
Outputs
JavaScript Object Notation (JSON) in BioSimulators simulator schema
Zip of HDF5 and PDF files
Log
JavaScript Object Notation (JSON) in BioSimulators log schema
Eleftherios Ouzounoglou, Dimitrios Kalamatianos, Evangelia Emmanouilidou, Maria Xilouri, Leonidas Stefanis, Kostas Vekrellis & Elias S Manolakos. In silico modeling of the effects of alpha-synuclein oligomerization on dopaminergic neuronal homeostasis. BMC Systems Biology 8 (2014).
Uniform time course
LSODA/LSODAR hybrid method
SBML
SED-ML
COMBINE/OMEX
AMICI 0.11.25
6471119c49c0d898ffdef043
BioModels
View project essentials in the liteweight Reproducibility Portal.