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Project
Download File
Open Modeling and Exchange (OMEX)
Outputs
JavaScript Object Notation (JSON) in BioSimulators simulator schema
Zip of HDF5 and PDF files
Log
JavaScript Object Notation (JSON) in BioSimulators log schema
Eduard J. Kerkhoven, Fiona Achcar, Vincent P. Alibu, Richard J. Burchmore, Ian H. Gilbert, Maciej TrybiĆo, Nicole N. Driessen, David Gilbert, Rainer Breitling, Barbara M. Bakker & Michael P. Barrett. Handling uncertainty in dynamic models: the pentose phosphate pathway in Trypanosoma brucei. PLoS Computational Biology 9, 12 (2013).
Uniform time course
CVODE
SBML
SED-ML
COMBINE/OMEX
AMICI 0.11.25
647a4b4e77b6669655061015
BioModels
View project essentials in the liteweight Reproducibility Portal.
BIOMD0000000516_url.sedml
Simulation Experiment Description Markup Language (SED-ML)
BIOMD0000000516_url.xml
Systems Biology Markup Language (SBML)
BIOMD0000000516-biopax2.owl
Resource Description Framework XML (RDF-XML)
BIOMD0000000516-biopax3.owl
BIOMD0000000516-matlab.m
MATLAB
BIOMD0000000516-octave.m
BIOMD0000000516.m
BIOMD0000000516.ode
BIOMD0000000516.pdf
Portable Document Format (PDF)
BIOMD0000000516.png
Portable Network Graphics (PNG)
BIOMD0000000516.svg
Scalable Vector Graphics (SVG)
curation_image.png
curation_notes.txt
TEXT
metadata.rdf
OMEX Metadata