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Project
Download File
Open Modeling and Exchange (OMEX)
Outputs
JavaScript Object Notation (JSON) in BioSimulators simulator schema
Zip of HDF5 and PDF files
Log
JavaScript Object Notation (JSON) in BioSimulators log schema
Daniela Besozzi, Paolo Cazzaniga, Dario Pescini, Giancarlo Mauri, Sonia Colombo & Enzo Martegani. The role of feedback control mechanisms on the establishment of oscillatory regimes in the Ras/cAMP/PKA pathway in S. cerevisiae. EURASIP Journal on Bioinformatics and Systems Biology 2012, 1 (2012).
Dario Pescini, Paolo Cazzaniga, Daniela Besozzi, Giancarlo Mauri, Loredana Amigoni, Sonia Colombo & Enzo Martegani. Simulation of the Ras/cAMP/PKA pathway in budding yeast highlights the establishment of stable oscillatory states. Biotechnology Advances 30, 1 (2012).
Paolo Cazzaniga, Dario Pescini, Daniela Besozzi, Giancarlo Mauri, Sonia Colombo & Enzo Martegani. Modeling and stochastic simulation of the Ras/cAMP/PKA pathway in the yeast Saccharomyces cerevisiae evidences a key regulatory function for intracellular guanine nucleotides pools. Journal of Biotechnology 133, 3 (2008).
Uniform time course
CVODE
SBML
SED-ML
COMBINE/OMEX
tellurium 2.2.8
647a4b4077b6669655060eb3
BioModels
View project essentials in the liteweight Reproducibility Portal.
BIOMD0000000478_url.sedml
Simulation Experiment Description Markup Language (SED-ML)
BIOMD0000000478_url.xml
Systems Biology Markup Language (SBML)
BIOMD0000000478-biopax2.owl
Resource Description Framework XML (RDF-XML)
BIOMD0000000478-biopax3.owl
BIOMD0000000478-matlab.m
MATLAB
BIOMD0000000478-octave.m
BIOMD0000000478.m
BIOMD0000000478.ode
BIOMD0000000478.pdf
Portable Document Format (PDF)
BIOMD0000000478.png
Portable Network Graphics (PNG)
BIOMD0000000478.svg
Scalable Vector Graphics (SVG)
curation_image.png
curation_notes.txt
TEXT
metadata.rdf
OMEX Metadata