Browse simulation projects
Browse simulator tools
Browse the docs
View full simulation details including customizable plots, files, logs, and more.
Project
Download File
Open Modeling and Exchange (OMEX)
BIOMD0000000465_url.sedml
Simulation Experiment Description Markup Language (SED-ML)
BIOMD0000000465_url.xml
Systems Biology Markup Language (SBML)
BIOMD0000000465-biopax2.owl
Resource Description Framework XML (RDF-XML)
BIOMD0000000465-biopax3.owl
BIOMD0000000465-matlab.m
MATLAB
BIOMD0000000465.m
BIOMD0000000465.ode
BIOMD0000000465.pdf
Portable Document Format (PDF)
BIOMD0000000465.png
Portable Network Graphics (PNG)
BIOMD0000000465.svg
Scalable Vector Graphics (SVG)
BIOMD0000000465.vcml
Virtual Cell Markup Language (VCML)
curation_image.png
curation_notes.txt
TEXT
metadata.rdf
OMEX Metadata
Outputs
JavaScript Object Notation (JSON) in BioSimulators simulator schema
Zip of HDF5 and PDF files
Log
JavaScript Object Notation (JSON) in BioSimulators log schema
Andrew Koo, David Nordsletten, Renato Umeton, Beracah Yankama, Shiva Ayyadurai, Guillermo García-Cardeña & C. Forbes Dewey. In silico modeling of shear-stress-induced nitric oxide production in endothelial cells through systems biology. Biophysical Journal 104, 10 (2013).
Uniform time course
CVODE
SBML
SED-ML
COMBINE/OMEX
PySCeS 1.0.0
6488bad56262268786a27724
BioModels
View project essentials in the liteweight Reproducibility Portal.