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Project
Download File
Open Modeling and Exchange (OMEX)
Outputs
JavaScript Object Notation (JSON) in BioSimulators simulator schema
Zip of HDF5 and PDF files
Log
JavaScript Object Notation (JSON) in BioSimulators log schema
Leah R. Band, Darren M. Wells, Antoine Larrieu, Jianyong Sun, Alistair M. Middleton, Andrew P. French, Géraldine Brunoud, Ethel Mendocilla Sato, Michael H. Wilson, Benjamin Péret, Marina Oliva, Ranjan Swarup, Ilkka Sairanen, Geraint Parry, Karin Ljung, Tom Beeckman, Jonathan M. Garibaldi, Mark Estelle, Markus R. Owen, Kris Vissenberg, T. Charlie Hodgman, Tony P. Pridmore, John R. King, Teva Vernoux & Malcolm J. Bennett. Root gravitropism is regulated by a transient lateral auxin gradient controlled by a tipping-point mechanism. Proceedings of the National Academy of Sciences 109, 12 (2012).
Uniform time course
CVODE
SBML
SED-ML
COMBINE/OMEX
AMICI 0.11.25
647a4b2477b6669655060d01
BioModels
View project essentials in the liteweight Reproducibility Portal.
BIOMD0000000414_url.sedml
Simulation Experiment Description Markup Language (SED-ML)
BIOMD0000000414_url.xml
Systems Biology Markup Language (SBML)
BIOMD0000000414-biopax2.owl
Resource Description Framework XML (RDF-XML)
BIOMD0000000414-biopax3.owl
BIOMD0000000414-matlab.m
MATLAB
BIOMD0000000414-octave.m
BIOMD0000000414.m
BIOMD0000000414.ode
BIOMD0000000414.pdf
Portable Document Format (PDF)
BIOMD0000000414.png
Portable Network Graphics (PNG)
BIOMD0000000414.sci
Scilab
BIOMD0000000414.svg
Scalable Vector Graphics (SVG)
BIOMD0000000414.vcml
Virtual Cell Markup Language (VCML)
curation_image.png
curation_notes.txt
TEXT
metadata.rdf
OMEX Metadata