Browse simulation projects
Browse simulator tools
Browse the docs
View full simulation details including customizable plots, files, logs, and more.
Project
Download File
Open Modeling and Exchange (OMEX)
BIOMD0000000412_url.sedml
Simulation Experiment Description Markup Language (SED-ML)
BIOMD0000000412_url.xml
Systems Biology Markup Language (SBML)
BIOMD0000000412-biopax2.owl
Resource Description Framework XML (RDF-XML)
BIOMD0000000412-biopax3.owl
BIOMD0000000412-matlab.m
MATLAB
BIOMD0000000412-octave.m
BIOMD0000000412.m
BIOMD0000000412.ode
BIOMD0000000412.png
Portable Network Graphics (PNG)
BIOMD0000000412.svg
Scalable Vector Graphics (SVG)
curation_image.png
curation_notes.txt
TEXT
metadata.rdf
OMEX Metadata
Outputs
JavaScript Object Notation (JSON) in BioSimulators simulator schema
Zip of HDF5 and PDF files
Log
JavaScript Object Notation (JSON) in BioSimulators log schema
Alexandra Pokhilko, Aurora Piñas Fernández, Kieron D Edwards, Megan M Southern, Karen J Halliday & Andrew J Millar. The clock gene circuit in Arabidopsis includes a repressilator with additional feedback loops. Molecular Systems Biology 8 (2012).
Uniform time course
CVODE
SBML
SED-ML
COMBINE/OMEX
tellurium 2.2.8
6480c4f4195afd5df1769be6
BioModels
View project essentials in the liteweight Reproducibility Portal.