Browse simulation projects
Browse simulator tools
Browse the docs
View full simulation details including customizable plots, files, logs, and more.
Project
Download File
Open Modeling and Exchange (OMEX)
Outputs
JavaScript Object Notation (JSON) in BioSimulators simulator schema
Zip of HDF5 and PDF files
Log
JavaScript Object Notation (JSON) in BioSimulators log schema
Valentina Raia, Marcel Schilling, Martin Böhm, Bettina Hahn, Andreas Kowarsch, Andreas Raue, Carsten Sticht, Sebastian Bohl, Maria Saile, Peter Möller, Norbert Gretz, Jens Timmer, Fabian Theis, Wolf-Dieter Lehmann, Peter Lichter & Ursula Klingmüller. Dynamic mathematical modeling of IL13-induced signaling in Hodgkin and primary mediastinal B-cell lymphoma allows prediction of therapeutic targets. Cancer Research 71, 3 (2011).
Uniform time course
CVODE
SBML
SED-ML
COMBINE/OMEX
COPASI 4.36.260
64710b0d49c0d898ffde06f1
BioModels
View project essentials in the liteweight Reproducibility Portal.
BIOMD0000000313_url.sedml
Simulation Experiment Description Markup Language (SED-ML)
BIOMD0000000313_url.xml
Systems Biology Markup Language (SBML)
BIOMD0000000313-biopax2.owl
Resource Description Framework XML (RDF-XML)
BIOMD0000000313-biopax3.owl
BIOMD0000000313-matlab.m
MATLAB
BIOMD0000000313.m
BIOMD0000000313.ode
BIOMD0000000313.pdf
Portable Document Format (PDF)
BIOMD0000000313.png
Portable Network Graphics (PNG)
BIOMD0000000313.svg
Scalable Vector Graphics (SVG)
BIOMD0000000313.vcml
Virtual Cell Markup Language (VCML)
curation_image.png
curation_notes.txt
TEXT
metadata.rdf
OMEX Metadata