Browse simulation projects
Browse simulator tools
Browse the docs
View full simulation details including customizable plots, files, logs, and more.
Project
Download File
Open Modeling and Exchange (OMEX)
BIOMD0000000182_url.sedml
Simulation Experiment Description Markup Language (SED-ML)
BIOMD0000000182_url.xml
Systems Biology Markup Language (SBML)
BIOMD0000000182-biopax2.owl
Resource Description Framework XML (RDF-XML)
BIOMD0000000182-biopax3.owl
BIOMD0000000182-matlab.m
MATLAB
BIOMD0000000182.m
BIOMD0000000182.ode
BIOMD0000000182.pdf
Portable Document Format (PDF)
BIOMD0000000182.png
Portable Network Graphics (PNG)
BIOMD0000000182.svg
Scalable Vector Graphics (SVG)
BIOMD0000000182.vcml
Virtual Cell Markup Language (VCML)
curation_image.jpeg
Joint Photographic Experts Group (JPEG)
curation_notes.txt
TEXT
metadata.rdf
OMEX Metadata
Outputs
JavaScript Object Notation (JSON) in BioSimulators simulator schema
Zip of HDF5 and PDF files
Log
JavaScript Object Notation (JSON) in BioSimulators log schema
Susana R. Neves, Panayiotis Tsokas, Anamika Sarkar, Elizabeth A. Grace, Padmini Rangamani, Stephen M. Taubenfeld, Cristina M. Alberini, James C. Schaff, Robert D. Blitzer, Ion I. Moraru & Ravi Iyengar. Cell shape and negative links in regulatory motifs together control spatial information flow in signaling networks. Cell 133, 4 (2008).
Uniform time course
CVODE
SBML
SED-ML
COMBINE/OMEX
COPASI 4.36.260
6471094a0dcacb55678b76dd
BioModels
View project essentials in the liteweight Reproducibility Portal.