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Project
Download File
Open Modeling and Exchange (OMEX)
Outputs
JavaScript Object Notation (JSON) in BioSimulators simulator schema
Zip of HDF5 and PDF files
Log
JavaScript Object Notation (JSON) in BioSimulators log schema
Leland H. Hartwell, John J. Hopfield, Stanislas Leibler & Andrew W. Murray. From molecular to modular cell biology. Nature 402, 6761 Suppl (1999).
Perla Del Conte‐Zerial, Lutz Brusch, Jochen C Rink, Claudio Collinet, Yannis Kalaidzidis, Marino Zerial & Andreas Deutsch. Membrane identity and GTPase cascades regulated by toggle and cut-out switches. Molecular Systems Biology 4 (2008).
Klaus Peter Hofmann, Christian M.T. Spahn, Reinhart Heinrich & Udo Heinemann. Building functional modules from molecular interactions. Trends in Biochemical Sciences 31, 9 (2006).
Uniform time course
CVODE
SBML
SED-ML
COMBINE/OMEX
AMICI 0.11.25
6471093049c0d898ffddcf37
BioModels
View project essentials in the liteweight Reproducibility Portal.
BIOMD0000000174_url.sedml
Simulation Experiment Description Markup Language (SED-ML)
BIOMD0000000174_url.xml
Systems Biology Markup Language (SBML)
BIOMD0000000174-biopax2.owl
Resource Description Framework XML (RDF-XML)
BIOMD0000000174-biopax3.owl
BIOMD0000000174-matlab.m
MATLAB
BIOMD0000000174-octave.m
BIOMD0000000174.m
BIOMD0000000174.ode
BIOMD0000000174.pdf
Portable Document Format (PDF)
BIOMD0000000174.png
Portable Network Graphics (PNG)
BIOMD0000000174.svg
Scalable Vector Graphics (SVG)
BIOMD0000000174.vcml
Virtual Cell Markup Language (VCML)
curation_image.png
curation_notes.txt
TEXT
metadata.rdf
OMEX Metadata