Browse simulation projects
Browse simulator tools
Browse the docs
View full simulation details including customizable plots, files, logs, and more.
Project
Download File
Open Modeling and Exchange (OMEX)
Outputs
JavaScript Object Notation (JSON) in BioSimulators simulator schema
Zip of HDF5 and PDF files
Log
JavaScript Object Notation (JSON) in BioSimulators log schema
PMR/e: 7b7
CC BY 3.0
Uniform time course
CVODE
CellML
SED-ML
COMBINE/OMEX
OpenCOR 2021-10-05
62601465abe612c540c6731a
Physiome Model Repository
Bilal Shaikh
View project essentials in the liteweight Reproducibility Portal.
BG_B1AR.cellml
CellML (CellML)
BG_B1AR.sedml
Simulation Experiment Description Markup Language (SED-ML)
BG_LRGbinding.cellml
BG_BARK_reaction.png
Portable Network Graphics (PNG)
BG_PKACI_reaction.png
drawing.svg
Scalable Vector Graphics (SVG)
exposure_frontpage.rst
TEXT
kinetic_reactions.png
find_BG_parameters.py
Python
metadata.rdf
OMEX Metadata
all_forward_matrix.txt
all_reverse_matrix.txt
Kname.txt
rxnID.txt
stoichiometric_matrix_b1AR.xlsx
Office Open XML spreadsheet (XLSX)
kinetic_parameters_B1AR.py
all_params.mat
MATLAB
saucerman_b1_AR_kinetic.cellml
saucerman_b1_AR_kinetic.sedml
constants_BG.cellml
units_BG.cellml